Our HPC benchmarking on jModelTest2 has just been published in:
The International Journal of High Performance Computing Applications 2014, Vol. 28(1) 112–125
The performance evaluation of jModelTest2 on a 40-core shared memory system and on a 528-core cluster has shown high scalability, with speedups of the multithreaded version of up to 32, and up to 257 for the hybrid shared/distributed memory implementation. This can represent a reduc-tion in the execution time of some analyses from 4 days down to barely 20 minutes.