Category Archives: Publications

New paper on structurally constrainted substitution models

Hi, Together with Ugo Bastolla group at UCM, we have published in Bioinformatics a method and accompanying software (https://code.google.com/p/proteinevolver/) to simulate protein evolution taking into consideration structural constraints.   Protein Evolution along Phylogenetic Histories under Structurally Constrained Substitution Models

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New paper on HPC jmodeltest

Hi, A new paper benchmarking┬á the High Performance Computing version of jmodeltest2 is available online. This is a collaboration with Ramon Doallo’s HPC group at the University of Coru├▒a, and lead by our joint graduate student Diego Darriba. Here we … Continue reading

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New editorial in JME

Hi, a new editorial just came out in the Journal of Molecular Evolution in which I discuss the impact of NGS data in the development of practical models of molecular evolution for phylogenomic reconstruction:   Phylogenetic Models of Molecular Evolution: … Continue reading

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