Lab seminars
calpost
March 2021 M T W T F S S « Jul 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 tagcloud
cabo verde cancer cancer evolution cape verde CONTRA conus deep coalescence duplication and loss forensic genetics gene duplication and loss gene family gene tree genome grants HIV-1 homology categories horizontal gene transfer jobs lab locus tree marine genomics models modeltest NGS phd phylocancer phylogeography postdoc postdocs protein evolution reconciliation simulation single-cell species tree species trees supertree virus evolution
Category Archives: Research
job: bioinformatician for NGS analysis of SARS-CoV-2
RESEARCH CONTRACT: SARS-COV-2 BIOINFORMATICS Workplace: Phylogenomics Lab, CINBIO, Universidade de Vigo, Spain Duration: 12 months starting Sept-Oct Gross remuneration: 16,000-25,000 euros per year depending on qualifications TASKS TO BE PERFORMED Bioinformatic analysis of SARS-CoV-2 genomes ESSENTIAL REQUIREMENTS Experience … Continue reading
Posted in Research
Leave a comment
CellCoal: NGS simulation of single-cell somatic evolution
Check my new simulator CellCoal for the coalescent simulation of single-cell sequencing genotypes. CellCoal simulates the history of single-cell samples obtained from somatic cell populations with different demographic histories and produces single-nucleotide variants under a variety of mutation models, sequencing read counts, … Continue reading
Posted in Research
Leave a comment
A next-generation version of modeltest
The Stamatakis lab as taken over the Modeltest series! check Modeltest-NG. ModelTest-NG is much faster than jModelTest and ProtTest but equally accurate and introduces new features, such as ascertainment bias correction, mixture, and free-rate models, or the automatic processing of … Continue reading
Posted in Publications, Research
Leave a comment
paper in Nature Communications on cancer biogeography
We have published a new paper in Nature Communications where we show how statistical phylogenetics can help to understand tumoral dynamics over time and space: https://www.nature.com/articles/s41467-019-12926-8
Posted in Research
Leave a comment
Excellence grant from the Galician government!
We have been awarded an excellence 3-year structural grant for research groups from the Galician government. So now our GXB group has been stamped as Competitive Reference Group. We want to thank Xunta de Galicia for this support
Posted in Research
Leave a comment
New PhD thesis in the lab!
Congratulations to Nuria for passing with honors her Ph.D. viva!
Posted in Research
Leave a comment
New paper on germline evolution of human cancer genes by Alberto Vicens
https://www.mdpi.com/2073-4425/9/12/582
Posted in Research
Leave a comment
Comparing single-cell whole-genome amplification strategies
We finally put it together: https://www.biorxiv.org/content/early/2018/10/16/443754
Merly got her PhD
Congratulations to Merly for her PhD awarded today on NGS phylogenomics! You’ve been a GREAT student. Good luck for your postdoc at UC Santa Cruz. We’ll miss you…
Posted in Research
Leave a comment
NGS coverage and evolutionary inferences from single-cells
New paper just out @GenomeMedicine! We report the impact of sequencing depth (and sampling effort) towards variant detection, genotype accuracy, clonal inference and phylogenetic reconstruction from single-cell cancer data. https://rdcu.be/LJ4E