Departamento de Bioquímica, Genética e Inmunología, Universidad de Vigo, 36310 Vigo, Spain
I am broadly interested in phylogenetic inference and its use on understanding the processes that lead to genes, populations and species divergence. Most of my work has focused on colonization and diversification patterns of reptiles from Western Indian Ocean Islands (Madagascar, Comoros and the Seychelles).
Currently I am a postdoctoral fellow at the phylogenomics group at the University of Vigo, where I am collaborating in several projects related to phylogenetic and specie-tree inference from closely related genomes using next-generation sequencing (NGS) data, mostly using mollusks as model organisms.
For Full Publications and Additional Info
@ImpactStory [a really cool an open source, web-based tool that provides altmetrics to help researchers measure and share the impacts of all their research outputs]
@Publons [the record of my activity as a reviewer since 2013]
Science divulgation & Media
Our local newspaper, Faro de Vigo, decided to give some coverage to my work: check it out here :)
Here our “Giant Gecko” fieldwork getting some coverage in the Seychelles Paper is finally out, check bellow!
I’ve collaborated with other divulgation and environmental education activities. We even made some cool guides small books. You may want to have a look here and here. Usually I was on the amphibians and reptiles group (the coolest!)
LATEST NEWS: check the really work of Merly in:
Escalona M, Rocha S, Posada D. NGSphy: phylogenomic simulation of next-generation sequencing data (submitted). http://dx.doi.org/10.1101/197715 and http://github.com/merlyescalona/ngsphy
Vasconcelos R, Rocha S, Santos X (2017). Sharing refuges on arid islands: ecological and social influence on aggregation behaviour of wall geckos. PeerJ. DOI 10.7717/peerj.2802
Rocha S, Perera A, Bunbury N, Kaiser-Bunbury CN, Harris DJ (2016). Speciation history and species-delimitation within the Seychelles Bronze geckos, Ailuronyx spp.: molecular and morphological evidence. Biological Journal of the Linnean Society, online early access. DOI: 10.1111/bij.12895
Ribeiro A, Foote A, Kupzoc A, Frazão B, Limborg MT, Piñeiro R, Abalde S, Rocha S, da Fonseca RR (2016). Marine genomics: news and views. Marine Genomics, online early access. http://dx.doi.org/10.1016/j.margen.2016.09.002
Escalona M, Rocha S, Posada D (2016). A comparison of tools for the simulation of genomic next-generation sequencing data. Nature Reviews Genetics doi:10.1038/nrg.2016.57
Freitas S, Rocha S, Campos J, Ahmadzadeh F, Corti C, Sillero N, Ilgaz Ç, Kumlutaş Y, Arakelyan M, Harris DJ, Carretero MA. (2016) Parthenogenesis through the Ice Ages: a biogeographic analysis of Caucasian rock lizards (genus Darevskia). Molecular Phylogenetics and Evolution, 102: 117-127 (DOI:10.1016/j.ympev.2016.05.035).
Rocha S, Perera A., Harris D.J., Silva A., Posada D. (2016) Evolutionary history of Trachylepis skinks in the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure. Biological Journal of the Linnean Society, 119: 15-36 (DOI: 10.1111/bij.12803)
Harris D.J., Perera A., Valente J., Rocha S. (2015) Deep genetic differentiation within Janetaescincus spp. (Squamata: Scincidae) from the Seychelles Islands. Herpetological Journal, 25: 205-213
Valente J, Rocha S., Harris D.J. (2014) Differentiation within the endemic burrowing skink Pamelaescincus gardineri, across the Seychelles islands, assessed by mitochondrial and nuclear markers. African Journal of Herpetology, 63: 25-33 (doi:10.1080/21564574.2013.856354)
Rocha S., Posada D., Harris D.J. (2013) Phylogeography and diversification history of day-gecko genus Phelsuma on the Seychelles islands. BMC Evolutionary Biology, 13:3 (online access)
Rocha S., Harris, D.J, Posada, D. (2011) Cryptic diversity within the endemic Prehensile-tailed gecko Urocotyledon inexpectata across the Seychelles Islands: patterns of phylogeographic structure and isolation at multilocus level. Biological Journal of the Linnean Society, 104, 177-191. (DOI: 10.1111/j.1095-8312.2011.01710.x)
Catarina, P., Rocha, S., Carvalho, B. M., Lopes, S., Mourão, S., Vallinoto, M., Brunes, T.O., Haddad, C.F.B., Gonçalves, H., Sequeira, F., Ferrand, N. (2009) New primers for the amplification and sequencing of nuclear loci in a taxonomically wide set of reptiles and amphibians. Conservation Genetic Resourses. 2, 181-185. (DOI: 10.1007/s12686-009-9126-4)
Rocha S., Harris, D.J., Perera, A., Silva, A., Vasconcelos, R., Carretero, M.A. (2009) Recent data on the distribution of Lizards and Snakes of the Seychelles. Herpetological Bulletin, 110, 20-32. (publication site)
Rocha S., Vences M., Glaw F., Posada D., Harris, D.J. (2009) Multigene Phylogeny of Malagasy day geckos of the genus Phelsuma. Molecular Phylogenetics and Evolution, 52, 530-537. (doi:10.1016/j.ympev.2009.03.032)
Rocha S., Carretero M.A., Vences M., Glaw F., Harris D.J. (2006) Deciphering patterns of trans-oceanic dispersal: the Evolutionary Origin and Biogeography of coastal lizards (Cryptoblepharus) in the Western Indian Ocean region. Journal of Biogeography, 33, 13-22. (DOI: 10.1111/j.1365-2699.2005.01375.x)
Carretero, M. A., Harris, D. J., Rocha, S. (2005) Recent observations of reptiles in the Comoro islands (Western Indian Ocean). Herpetological Bulletin, 91, 19-28 (publication site)
Sequeira F., Alexandrino J., Rocha S., Arntzen J.W., Ferrand N. (2005) Genetic exchange across a hybrid within the Iberian golden-stiped salamander, Chioglossa lusitanica. Molecular Ecology, 14, 245-254. (DOI: 10.1111/j.1365-294X.2004.02390.x)